It isn't going to be a problem with storage, how you clean them, or even humidity... This has to be a problem with the lacquer layer.
I did some research and came up with a load of references that point back to the infamous Philips CD bronzing issue. Go here, here, and here.
So yeah, I'm a douche. Sorry.
Either way, the condition isn't widespread; the condition apparently shows within a decade if it's going to show at all, and 'modern' pressing methods have solved the problem that caused it in the first place(apparently, the lacquer that protects the aluminum data layer wasn't immune to the sulfur in the printed manual, allowing the aluminum to corrode slightly.) You shouldn't worry too much about your current collection: if it hasn't happened to your classic games yet, it probably wont. As far as your games that are already bad .... Sorry guy.
There are isolated incidents with very specific print runs of modern DVD's and Blu-rays, but they all remain unconfirmed. Use Google to check them out: I'm over link quota for the day.