The biohazard boxes were slightly wider because some of them were 2 disk versions. The 2 disk boxes are slightly fatter.
As for the fat boxed sets they are roughly all the same size but some are thicker than others.
Heres a pic of all the ones i have so you can see the size comparison.
And heres them from the side as you can see they are all the same size just some are thicker.
Heres all the fat boxed sets for gc.
Pokemon box (w/ gba link cable)
Shikigami no shiro II (w/ cat figure)
Doubutsu no mori e+ (w/ e-reader)
Mario party 6 (w/ microphone)
Bakuten beyblade shoot 2002 (w/ beyblade)
Nintendo puzzle collection (w/ gba link cable)
Phantasy star online (w/ modem)
Homeland (w/ broadband adapter)
Bigger boxed sets (bigger than fat ones)
Zoids (w/ zoid figure)
Wrestlemania (cant remember which) (w/ tshirt & mug)
Biohazard collection
Dance dance revolution starring mario (w/ dance mat)
Donkey konga (w/ tarukonga controller)
Donkey konga 1 & 2 boxed set (w/ tarukonga controller)
Ohenro san (w/ pedometer)
thats all the ones i can think of right now, you have allready listed all the longbox ones there is.