Bullwinkle's for me too. Except not the Santa Clara one but the one in Montclair (socal). I wish I could see it again today as it was. Its still there and its still an amusement place called family fun center or something but it's just not the same.
Edit:
Tomorrowland Arcade in Disneyland! I almost forgot that one. It was located next to the Space Mountain exit and Star Tours exit. Two floors of gaming goodness with a huge scale X-Wing fighter hanging from the ceiling. They had tons of great games back in the early 90s or so. Still is an arcade but only the bottom floor and its all either racing games or music games.