You can hardly mention Skullmonkeys without mentioning its sadly neglected PC prequel, The Neverhood. Rumor has it there's actually a movie in the works.
Trio the Punch probably deserves a mention right about now.
http://www.djpretzel.com/blog/?page_id=16
And probably Waku Waku 7, come to think if it.
http://www.hg101.classicgaming.games...ftfighters.htm